Manage Custom Tracks
 
genome     assembly     [hg38]

Name Description Type Doc Items Pos
U2AF2 iCLIP HeLa plusCrosslinks of U2AF2 iCLIP HeLa plus strand.bedGraph 17303333chr4_GL000008v2_random:  
U2AF2 iCLIP HeLa minusCrosslinks of U2AF2 iCLIP HeLa minus strand.bedGraph 15944408chr4_GL000008v2_random:  
U2AF2 eCLIP HepG2 plusCrosslinks of U2AF2 eCLIP HepG2 plus strand.bedGraph 4536630chr4_GL000008v2_random:  
U2AF2 eCLIP HepG2 minusCrosslinks of U2AF2 eCLIP HepG2 minus strand.bedGraph 4399133chr4_GL000008v2_random:  
crosslinks CSFT2 HepG2 minus strandCrosslinks of CSFT2 in HepG2 from ENCODE data set minus strand.bigWig      
crosslinks CSFT2 HepG2 plus strandCrosslinks of CSFT2 in HepG2 from ENCODE data set plus strand.bigWig      
crosslinks SF3B1 K562 Encode minus strandCrosslinks of SF3B1 in K562 from ENCODE data set minus strand.bigWig      
crosslinks SF3B1 K562 Encode plus strandCrosslinks of SF3B1 in K562 from ENCODE data set plus strand.bigWig      
crosslinks SF3B1 K562 Pacholewska minus strandCrosslinks of SF3B1 in K562 from Pacholewska et al. 2024 (https://doi.org/10.1101/2024.01.26.576051) iCLIP data set minus strand.bigWig      
crosslinks SF3B1 K562 Pacholewska plus strandCrosslinks of SF3B1 in K562 from Pacholewska et al. 2024 (https://doi.org/10.1101/2024.01.26.576051) iCLIP data set plus strand.bigWig      
BindingSiteFinder_CSFT2_HepG2Bindings sites defined with BindingSiteFinder for the ENCODE eCLIP data set of CSFT2 in HepG2 cells.bedGraph 35614chr1:
DEWSeq_CSTF2_HepG2DEWSeq regions enriched for CSTF2 crosslinks for the ENCODE eCLIP data set of CSFT2 in HepG2 cells.bedGraph 8274chr10:
PureCLIP_CSFT2_HepG2PureCLIP defined binding sites of CSFT2 in the ENCODE HepG2 data.bedGraph 172058chr1:
BindingSiteFinder_SF3B1_K562Bindings sites defined with BindingSiteFinder for the ENCODE eCLIP data set of SF3B1 in K562 cells.bedGraph 107chr1:
DEWSeq_SF3B1_K562DEWSeq regions enriched for SF3B1 crosslinks for the ENCODE eCLIP data set of SF3B1 in K562 cells.bedGraph 10chr11:
PureCLIP_SF3B1_K562PureCLIP defined binding sites of SF3B1 in the ENCODE K562 data.bedGraph 2561chr1:
BindingSiteFinder_SF3B1_K562_PacholewskaBindings sites defined with BindingSiteFinder for the iCLIP data set of SF3B1 in K562 cells for Pacholwska et al. 2024 (https://doi.org/10.1101/2024.01.26.576051).bedGraph 96852chr1:
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Managing Custom Tracks
 

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

  • Name - a hyperlink to the update page where you can edit your track data.
  • Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
  • Type - the track type, determined by the Browser based on the format of the data.
  • Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
  • Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
  • Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.