Track Name: contains
and Description: contains
and
Group: is
Any
Comparative Genomics
Expression and Regulation
Genes and Gene Predictions
Literature
Mapping and Sequencing
Phenotype and Allele
Variation and Repeats
mRNA and EST
and
Data Format: is
Any
Alignment binary (bam) - binary SAM
Alignment Blast (psl) - Blast output
Alignment Chains (chain) - Pairwise alignment
Alignment Nets (netAlign) - Net alignments
Alignments (maf) - multiple alignment format
bed - browser extensible data
bigBed - self index, often remote bed format
ctgPos - Contigs
expRatio - Expression ratios
Genes (genePred) - Gene prediction and annotation
Peaks Broad (broadPeak) - ENCODE large region peak format
Peaks Narrow (narrowPeak) - ENCODE small region peak format
Repeats (rmsk) - Repeat masking
Signal (bedGraph) - graphically represented bed data
Signal (bigWig) - self index, often remote wiggle format
Signal (wig) - wiggle format
Signal (wigMaf) - multiple alignment wiggle
and
Include Public Hub Search Results:
NOTE: Including public hubs in results may be slow
ENCODE terms
and
Age of donor organism
Antibody or target protein
Assembly originally mapped to
Cell, tissue or DNA sample
Cellular compartment
Control or Input for ChIP-seq
ENCODE Data Freeze
Experiment (Assay) type
Experiment or Input
GEO sample accession
Lab producing data
Lab provided identifier
Lab specific details
Lab specific informatics
Library Protocol
Mapping algorithm
Paired/Single reads lengths
Platform
Principal Investigator on grant
Replicate number
RNA Extract
Sequencing Platform
Sex of donor organism
Strain of organism
Table name at UCSC
Tissue Source Type
Treatment
UCSC Accession
View - Peaks or Signals
is among
Any
10T1/2
3134
416B
A20
Adrenal
B-cell (CD19+)
B-cell (CD43-)
Bladder
Bone Marrow
Bone Marrow Derived Macrophage
Brown Adipose Tissue
C2C12
Cerebellum
Cerebrum
CH12
CNS
Colon
Cortex
Duodenum
EPC (CD117+ CD71+ TER119+)
EPC (CD117+ CD71+ TER119-)
EPC (CD117+ CD71- TER119-)
EPC (CD117- CD71+ TER119+)
EpiSC-5
EpiSC-7
Erythroblast
ES-46C
ES-Bruce4
ES-CJ7
ES-D3
ES-E14
ES-EM5Sox17huCD25
ES-TT2
ES-WW6
ES-WW6 F1KO
Fat Pad
Fibroblast
Fore Limb Bud
Frontal Lobe
FV-progenitor
FVL-stem
G1E
G1E-ER4
Genital Fat Pad
Headless Embryo
Heart
Hind Limb Bud
J185a
Kidney
L1210
Large Intestine
Limb
Liver
Lung
Mammary Gland
MEF
Megakaryocyte
MEL
MEP
Mesoderm
mG/ER
NIH-3T3
Olfactory Bulb
Ovary
Patski
Placenta
Retina
Skeletal Muscle
Small Intestine
Spleen
Stomach
Subcutaneous Fat Pad
T-Naive
Testis
THelper-Activated
Thymus
TReg
TReg-Activated
Whole Brain
ZhBTc4
Cell, tissue or DNA sample
and
Age of donor organism
Antibody or target protein
Assembly originally mapped to
Cell, tissue or DNA sample
Cellular compartment
Control or Input for ChIP-seq
ENCODE Data Freeze
Experiment (Assay) type
Experiment or Input
GEO sample accession
Lab producing data
Lab provided identifier
Lab specific details
Lab specific informatics
Library Protocol
Mapping algorithm
Paired/Single reads lengths
Platform
Principal Investigator on grant
Replicate number
RNA Extract
Sequencing Platform
Sex of donor organism
Strain of organism
Table name at UCSC
Tissue Source Type
Treatment
UCSC Accession
View - Peaks or Signals
is among
Any
BHLHE40 (NB100-1800)
c-Jun (sc-1694)
c-Myb (sc-7874)
c-Myc (sc-764)
CEBPB (sc-150)
CHD1 (NB100-60411)
CHD2 (ab68301)
CTCF (07-729)
CTCF (sc-15914)
E2F4 (sc-866)
ETS1 (sc-350)
FLI1 (sc-356)
FOSL1 (sc-605)
GATA1
GATA1 (sc-265)
GATA2 (sc-9008)
GCN5
H3ac (06-599)
H3K27ac (ab4729)
H3K27me3 (07-449)
H3K27me3 (9733S)
H3K36me3 (9763S)
H3K36me3 (ab9050)
H3K4me1 (ab8895)
H3K4me2 (ab32356)
H3K4me2 (ab7766)
H3K4me3 (07-473)
H3K79me2 (39143)
H3K79me2 (ab3594)
H3K79me3 (ab2621)
H3K9ac (ab4441)
H3K9me3 (ab8898)
HCFC1 (NB100-68209)
JUND (sc-74)
MAFK (ab50322)
MAX (sc-197)
MAZ (ab85725)
MXI1 (AF4185)
MYOD (sc-32758)
Myogenin (sc-12732)
NELF-E (sc-32912)
Nrf2 (sc-22810)
NRSF
P300\/EP300 (sc-584)
P300\/EP300 (sc-585)
PAX5 (ab12000)
POL2 (MMS-126R)
POL2 (phospho S2) (ab5095)
Pol2-4H8 (ab5408)
RAD21 (ab992)
RCOR1\/COREST (sc30189)
SIN3A (NB600-1263)
SMC3 (ab9263)
SRF (sc-335)
TAL1 (sc-12984)
TBP (ab62126)
TCF12 (sc-357)
TCF3 (sc-349)
UBF (sc-13125)
USF1 (sc-229)
USF2 (ab60931)
ZC3H11A (NB100-74650)
ZKSCAN1 (HPA006672)
ZMIZ1 (ab65767)
ZNF384 (HPA004051)
Antibody or target protein