Configure Image - Genome Browser V478
 
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Configure Tracks on UCSC Genome Browser: Cow Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Scaffolds Assembly Scaffolds
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
RefSeq Genes RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Other RefSeq Non-Cow RefSeq Genes
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
-   mRNA and EST    
Cow ESTs Cow ESTs Including Unspliced
Cow mRNAs Cow mRNAs from GenBank
Other mRNAs Non-Cow mRNAs from GenBank
Spliced ESTs Cow ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Pig Chain/Net Pig (Nov. 2009 (SGSC Sscrofa9.2/susScr2)), Chain and Net Alignments
Dog Chain/Net Dog (May 2005 (Broad/canFam2)), Chain and Net Alignments
Rat Chain/Net Rat (Nov. 2004 (Baylor 3.4/rn4)), Chain and Net Alignments
Mouse Chain/Net Mouse (July 2007 (NCBI37/mm9)), Chain and Net Alignments
Human Chain/Net Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
Opossum Chain/Net Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments
Platypus Chain/Net Platypus (Mar. 2007 (WUGSC 5.0.1/ornAna1)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
EVA SNP Release 4 Short Genetic Variants from European Variant Archive Release 4
new EVA SNP Release 5 Short Genetic Variants from European Variant Archive Release 5
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
NumtS Sequence Cow NumtS Mitochondrial Sequence
Simple Repeats Simple Tandem Repeats by TRF