Configure Image - Genome Browser V478
 
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Display chromosome ideogram above main graphic
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Configure Tracks on UCSC Genome Browser: Pig Feb. 2017 (Sscrofa11.1/susScr11)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Custom Tracks    
AS601_PEF.indel.vcf.gz AS601_PEF.indel.vcf.gz
AS601_PEF.snv.vcf.gz AS601_PEF.snv.vcf.gz
AS602_PEF.indel.vcf.gz AS602_PEF.indel.vcf.gz
AS602_PEF.snv.vcf.gz AS602_PEF.snv.vcf.gz
AS603_PEF.indel.vcf.gz AS603_PEF.indel.vcf.gz
AS603_PEF.snv.vcf.gz AS603_PEF.snv.vcf.gz
AS604_PEF.indel.vcf.gz AS604_PEF.indel.vcf.gz
AS604_PEF.snv.vcf.gz AS604_PEF.snv.vcf.gz
TW3_PEF.indel.vcf.gz TW3_PEF.indel.vcf.gz
TW3_PEF.snv.vcf.gz TW3_PEF.snv.vcf.gz
TW9_PEF.indel.vcf.gz TW9_PEF.indel.vcf.gz
TW9_PEF.snv.vcf.gz TW9_PEF.snv.vcf.gz
OP402_WT901.indel.vcf.gz OP402_WT901.indel.vcf.gz
OP402_WT901.snv.vcf.gz OP402_WT901.snv.vcf.gz
OP902_WT901.indel.vcf.gz OP902_WT901.indel.vcf.gz
OP902_WT901.snv.vcf.gz OP902_WT901.snv.vcf.gz
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-Pig RefSeq Genes
TOGA vs. hg38 TOGA annotations using human/hg38 as reference
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Other mRNAs Non-Pig mRNAs from GenBank
Pig ESTs Pig ESTs Including Unspliced
Pig mRNAs Pig mRNAs from GenBank
Spliced ESTs Pig ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
ClinVar Lift Human ClinVar variants lifted to Pig
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Human Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
new EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust